A Foreword on AGENTS.md#One aspect of agents I hadn’t researched but knew was necessary to getting good results from agents was the concept of the AGENTS.md file: a file which can control specific behaviors of the agents such as code formatting. If the file is present in the project root, the agent will automatically read the file and in theory obey all the rules within. This is analogous to system prompts for normal LLM calls and if you’ve been following my writing, I have an unhealthy addiction to highly nuanced system prompts with additional shenanigans such as ALL CAPS for increased adherence to more important rules (yes, that’s still effective). I could not find a good starting point for a Python-oriented AGENTS.md I liked, so I asked Opus 4.5 to make one:
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The threat extends beyond accidental errors. When AI writes the software, the attack surface shifts: an adversary who can poison training data or compromise the model’s API can inject subtle vulnerabilities into every system that AI touches. These are not hypothetical risks. Supply chain attacks are already among the most damaging in cybersecurity, and AI-generated code creates a new supply chain at a scale that did not previously exist. Traditional code review cannot reliably detect deliberately subtle vulnerabilities, and a determined adversary can study the test suite and plant bugs specifically designed to evade it. A formal specification is the defense: it defines what “correct” means independently of the AI that produced the code. When something breaks, you know exactly which assumption failed, and so does the auditor.
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